Partonomy list P3F, primary language: LA, subsidiary: EN, interface: EN, work in progress

mesencephalon

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Top level systema nervosum
Level 2 encephalon Short Extended
Current level mesencephalon Short
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FMA TA TID UID
Short official Latin term
Short English equivalent
61993 5261 5261
mesencephalon
mesencephalon ; midbrain
30107 8559
external morphology of mesencephalon
77488 25703 5582
lamina quadrigeminalis (par) ; lamina tecti mesencephali (par)
quadrigeminal plate (pair); tectal plate (pair)
62403 40085 5586
colliculus superior (par)
superior colliculus (pair)
62404 40088 5585
colliculus inferior (par)
inferior colliculus (pair)
84359 40091 5579
trigonum lemnisci lateralis (par)
trigone of lateral lemniscus (pair)
77801 40094 5577
sulcus lateralis mesencephali (par)
lateral sulcus of mesencephalon (pair)
62394 25273 5575
pedunculus cerebri (par) ; crus cerebrale (par)
cerebral peduncle (pair) ; cerebral limb (pair)
83792 40097 5574
sulcus nervi oculomotorii (par)
oculomotor sulcus (pair)
83740 5572 5572
fossa interpeduncularis
interpeduncular fossa
77523 5573 5573
substantia perforata posterior
posterior perforated substance
30137 8558
morphologia interna mesencephali
internal morphology of mesencephalon
83902 5669 5669
tectum mesencephali
tectum of mesencephalon
9048 9048
grey substance of tectum of mesencephalon ▲
27196 8067
laminae colliculi superioris (par)
layers of superior colliculus (pair)
72406 27199 5674
stratum zonale (par) ; lamina I colliculi superioris (par)
zonal layer (pair) ; layer I of superior colliculus (pair)
72407 27202 5675
stratum griseum superficiale (par) ; lamina II colliculi superioris (par)
superficial grey layer (pair) ; layer II of superior colliculus (pair)
71112 27208 5676
stratum opticum (par) ; lamina III colliculi superioris (par)
optic layer (pair) ; layer III of superior colliculus (pair)
72409 27214 5677
stratum griseum intermedium (par) ; lamina IV colliculi superioris (par)
intermediate grey layer (pair) ; layer IV of superior colliculus (pair)
71113 32314 5678
stratum medullare intermedium (par) ; lamina V colliculi superioris (par)
intermediate medullary layer (pair) ; layer V of superior colliculus (pair)
72410 32317 5679
stratum griseum profundum (par) ; lamina VI colliculi superioris (par)
deep grey layer (pair) ; layer VI of superior colliculus (pair)
72416 32320 5680
stratum medullare profundum (par) ; lamina VII colliculi superioris (par)
deep medullary layer (pair) ; layer VII of superior colliculus (pair)
272347 40116 5670
nuclei colliculi inferioris (par)
nuclei of inferior colliculus (pair)
72413 40119 5671
nucleus centralis (par)
central nucleus (pair)
72412 40122 5672
nucleus externus (par) ; cortex externus colliculi inferioris (par)
external nucleus (pair) ; external cortex of inferior colliculus (pair)
72411 40125 5673
nucleus pericentralis (par) ; cortex dorsalis colliculi inferioris (par)
pericentral nucleus (pair) ; dorsal cortex of inferior colliculus (pair)
27148 8054
stratum I corticis dorsalis (par)
layer I of dorsal cortex (pair)
27151 8057
stratum II corticis dorsalis (par)
layer II of dorsal cortex (pair)
27154 8060
stratum III corticis dorsalis (par)
layer III of dorsal cortex (pair)
27160 8063
stratum IV corticis dorsalis (par)
layer IV of dorsal cortex (pair)
9046 9046
white matter of tectum of mesencephalon ; white substance of tectum of mesencephalon
27218 8092
tractus commissurales tecti mesencephali (par)
commissural tracts of tectum of mesencephalon (pair)
71115 5681 5681
commissura colliculi inferioris
commissure of inferior colliculus
72418 5682 5682
commissura colliculi superioris
commissure of superior colliculus
27222 8096
tractus longi tecti mesencephali (par)
long tracts of tectum of mesencephalon (pair)
27261 8100
tractus ascendentes medullae spinalis (par)
ascending tracts of spinal cord (pair)
77766 12531 12531
tractus anterolateralis ; systema anterolaterale ; lemniscus spinalis
anterolateral tract ; anterolateral system ; spinal lemniscus
5328 5328
fibrae spinotectales
spinotectal fibres
27535 8104
tractus ascendentes trunci encephali (par)
ascending tracts of brain stem (pair)
72417 5584 5584
brachium colliculi superioris
brachium of superior colliculus
71114 5583 5583
brachium colliculi inferioris
brachium of inferior colliculus
72502 5468 5468
lemniscus lateralis
lateral lemniscus
27539 8108
tractus descendentes tecti mesencephali (par)
descending tracts of tectum of mesencephalon (pair)
8479 8479
tractus tectobulbaris
tectobulbar tract
7503 7503
decussatio tegmentalis dorsalis ; decussatio tegmentalis posterior
dorsal tegmental decussation ; posterior tegmental decussation
8480 8480
tractus tectospinalis
tectospinal tract
7479 7479
central structures of mesencephalon
7478 7478
substantia grisea structurarum centralium mesencephali
grey matter of central structures of mesencephalon; grey substance of central structures of mesencephalon ▲
83134 5645 5645
substantia grisea periaqueductalis ; substantia grisea centralis
periaqueductal grey matter ; central grey matter
27115 6302
cellulae dopaminergicae periaqueductales (par) ; cellulae dopaminergicae A11 (par)
dopaminergic cells of periaqueductal grey matter (pair); dopaminergic cells A11 (pair)
7480 7480
substantia alba structurarum centralium mesencephali
white matter of central structures of mesencephalon; white substance of central structures of mesencephalon
27128 8043
tractus longi structurarum centralium mesencephali (par)
long tracts of central structures of mesencephalon (pair)
27133 8047
tractus ascendentes medullae spinalis (par)
ascending tracts of spinal cord (pair)
77766 12531 12531
tractus anterolateralis ; systema anterolaterale ; lemniscus spinalis
anterolateral tract ; anterolateral system ; spinal lemniscus
5329 5329
fibrae spinoperiaqueductales
spinoperiaqueductal fibres
27141 8051
tractus descendentes structurarum centralium mesencephali (par)
descending tracts of central structures of mesencephalon (pair)
8751 8751
fasciculus longitudinalis posterior descendens ; fasciculus longitudinalis dorsalis descendens
descending posterior longitudinal fasciculus ; descending dorsal longitudinal fasciculus
62393 5578 5578
tegmentum mesencephali
tegmentum of mesencephalon
83913 5625 5625
grey matter of tegmentum of mesencephalon
25787 8564
nuclei somatosensorii tegmenti mesencephali (par)
somatosensory nuclei of tegmentum of mesencephalon (pair)
54568 40100 5494
nucleus mesencephalicus nervi trigeminalis (par)
mesencephalic nucleus of trigeminal nerve (pair)
40103 8565
nucleus intercollicularis (par)
intercollicular nucleus (pair)
25791 8566
nuclei visuales tegmenti mesencephali (par)
visual nuclei of tegmentum of mesencephalon (pair)
25794 8567
nucleus terminalis lateralis (par)
lateral terminal nucleus (pair)
25782 9055
nuclei acustici tegmenti mesencephali (par) ; nuclei auditorii tegmenti mesencephali (par)
acoustic nuclei of tegmentum of mesencephalon (pair) ; auditory nuclei of tegmentum of mesencephalon (pair)
25778 9056
nucleus brachii colliculi inferioris (par)
nucleus of brachium of inferior colliculus (pair)
77492 25772 5652
nucleus saguli (par)
sagulum nucleus (pair)
77494 25775 5653
nucleus subbrachialis (par)
subbrachial nucleus (pair)
25801 8561
nuclei somatomotorii tegmenti mesencephali (par)
somatomotor nuclei of tegmentum of mesencephalon (pair)
54510 25804 5626
nucleus oculomotorius (par)
oculomotor nucleus (pair) ; nucleus of oculomotor nerve (pair)
25807 8562
nucleus caudalis centralis (par)
central caudal nucleus (pair)
25810 8563
nucleus interoculomotorius (par)
interoculomotor nucleus (pair)
25814 8568
nuclei visceromotorii tegmenti mesencephali (par)
visceromotor nuclei of tegmentum of mesencephalon (pair)
40108 5627
nuclei accessorii nervi oculomotorii (par)
accessory nuclei of oculomotor nerve (pair)
25820 8569
pars preganglionaris (par)
preganglionary part (pair)
25823 8570
pars nonganglionaris (par)
nonganglionary part (pair)
54524 25826 5629
nucleus anteromedialis (par)
anterior medial nucleus (pair)
5684 5684
nuclei reticulares tegmenti mesencephali
reticular nuclei of tegmentum of mesencephalon
62402 25835 5651
formatio reticularis mesencephali (par)
mesencephalic reticular formation (pair)
25838 8572
nucleus intracuneiformis (par)
intracuneiform nucleus (pair)
72427 25829 5658
nucleus cuneiformis (par)
cuneiform nucleus (pair)
25832 8571
regio locomotoria mesencephalica (par)
mesencephalic locomotor region (pair)
25842 15263
nuclei neuromodulatorii tegmenti mesencephali (par)
neuromodulator nuclei of tegmentum of mesencephalon (pair)
40110 5663
nuclei raphes mesencephali (par) ; cellulae serotonergicae (par)
raphe nuclei of mesencephalon (pair); serotonergic cells (pair)
77502 25845 5664
nucleus raphes linearis (par); cellula serotonergica B8 (par)
linear raphe nucleus (pair); serotonergic cells B8 (pair)
68462 5545 5545
nucleus raphes dorsalis; cellulae serotonergicae B7
dorsal raphe nucleus; serotonergic cells B7
25849 7445
nuclei dopaminergici (par)
dopaminergic nuclei (pair)
25861 14773
cellulae dopaminergicae areae tegmentalis ventralis (par) ; cellulae dopaminergicae A10 (par)
dopaminergic cells of ventral tegmental area (pair) ; dopaminergic cells A10 (pair)
25857 14753
cellulae dopaminergicae partis compactae substantiae nigrae (par) ; cellulae dopaminergicae A9 (par)
dopaminergic cells of compact part of substantia nigra (pair) ; dopaminergic cells A9 (pair)
25853 14752
cellulae dopaminergicae retrorubrales (par) ; cellulae dopaminergicae A8 (par)
retrorubral dopaminergic cells (pair) ; dopaminergic cells A8 (pair)
67947 27282 5597
substantia nigra (par)
substantia nigra (pair)
62907 27615 5598
pars compacta substantiae nigrae (par)
compact part of substantia nigra (pair)
25899 8578
pars dorsalis substantiae nigrae (par) ; pars posterior substantiae nigrae (par)
dorsal part of substantia nigra (pair) ; posterior part of substantia nigra (pair) ; ERR1
25914 8579
subnucleus dorsolateralis (par) ; subnucleus posterolateralis (par)
dorsolateral subnucleus (pair) ; posterolateral subnucleus (pair)
25917 8580
subnucleus dorsomedialis (par) ; subnucleus posteromedialis (par)
dorsomedial subnucleus (pair) ; posteromedial subnucleus (pair)
25903 8581
pars ventralis substantiae nigrae (par) ; pars anterior substantiae nigrae (par)
ventral part of substantia nigra (pair) ; anterior part of substantia nigra (pair) ; ERR1
25920 8582
subnucleus ventrolateralis (par) ; subnucleus anterolateralis (par)
ventrolateral subnucleus (pair) ; anterolateral subnucleus (pair)
25923 8583
subnucleus ventrointermedius (par) ; subnucleus anterointermedius (par)
ventrointermediate subnucleus (pair) ; anterointermediate subnucleus (pair)
25926 8584
subnucleus ventromedialis (par) ; subnucleus anteromedialis (par)
ventromedial subnucleus (pair) ; anteromedial subnucleus (pair)
76844 27636 5599
pars lateralis substantiae nigrae (par)
lateral part of substantia nigra (pair)
25911 8585
pars medialis substantiae nigrae (par)
medial part of substantia nigra (pair)
62908 27640 5600
pars reticulata substantiae nigrae (par)
reticular part of substantia nigra (pair)
30458 12250
area tegmentalis ventralis (par) ; area tegmentalis anterior (par)
ventral tegmental area (pair) ; anterior tegmental area (pair)
25869 5654
nuclei tegmentales ventrales mesencephali (par) ; nuclei tegmentales anteriores mesencephali (par)
ventral tegmental nuclei of mesencephalon (pair) ; anterior tegmental nuclei of mesencephalon (pair)
25875 8586
nucleus linearis rostralis (par) ; nucleus linearis superior (par)
rostral linear nucleus (pair) ; superior linear nucleus (pair)
25872 8587
nucleus linearis caudalis (par) ; nucleus linearis inferior (par)
caudal linear nucleus (pair) ; inferior linear nucleus (pair)
77495 25878 5655
nucleus interfascicularis (par)
interfascicular nucleus (pair)
77497 25881 5657
nucleus paranigralis (par)
parablack nucleus (pair)
77496 25884 5656
nucleus parabrachialis pigmentosus (par)
pigmented parabrachial nucleus (pair)
84341 29191 5685
nucleus parapeduncularis (par)
parapeduncular nucleus (pair)
25937 8589
nuclei limbici tegmenti mesencephali (par)
limbic nuclei of tegmentum of mesencephalon (pair)
72437 25943 5646
nucleus peripeduncularis (par)
peripeduncular nucleus (pair)
25947 8590
nuclei precerebellares tegmenti mesencephali (par)
precerebellar nuclei of tegmentum of mesencephalon (pair)
62407 25950 5647
nucleus ruber (par)
red nucleus (pair)
72431 25956 5648
pars magnocellularis (par)
magnocellular part (pair)
72430 25953 5649
pars parvocellularis (par)
parvocellular part (pair)
77493 25959 5650
pars posteromedialis (par) ; pars dorsomedialis (par)
posteromedial part (pair) ; dorsomedial part (pair)
83937 5602 5602
white matter of tegmentum of mesencephalon ; white substance of tegmentum of mesencephalon
25980 7464
radices centrales tegmenti mesencephali (par)
central roots of tegmentum of mesencephalon (pair)
72489 5464 5464
tractus mesencephalicus nervi trigeminalis
mesencephalic tract of trigeminal nerve
25984 9066
tractus longi tegmenti mesencephali (par)
long tracts of tegmentum of mesencephalon (pair)
25988 9067
tractus ascendentes medullae spinalis (par)
ascending tracts of spinal cord (pair)
77766 12531 12531
tractus anterolateralis ; systema anterolaterale ; lemniscus spinalis
anterolateral tract ; anterolateral system ; spinal lemniscus
5327 5327
fibrae spinomesencephalicae
spinomesencephalic fibres
25145 7956
fibrae spinointercolliculares
spinointercollicular fibres
26019 8594
tractus ascendentes trunci encephali (par)
ascending tracts of brain stem (pair)
25254 8485
fibrae nigrostriatales
nigrostriatal fibres
72502 5468 5468
lemniscus lateralis
lateral lemniscus
26022 7460
tractus vestibulomesencephalici
vestibulomesencephalic tracts
8427 8427
tractus vestibulomesencephalicus medialis
medial vestibulomesencephalic tract
8428 8428
tractus vestibulomesencephalicus lateralis
lateral vestibulomesencephalic tract
8429 8429
tractus vestibulomesencephalicus ventralis
ventral vestibulomesencephalic tract
8430 8430
tractus vestibulothalamicus
vestibulothalamic tract
83852 34075 8426
tractus trigeminothalamici
trigeminothalamic tracts
12170 12170
tractus trigeminothalamicus lateralis
lateral trigeminothalamic tract
72500 5463 5463
tractus trigeminothalamicus posterior ; tractus trigeminothalamicus dorsalis
posterior trigeminothalamic tract ; dorsal trigeminothalamic tract
5462 5462
tractus trigeminothalamicus anterior ; tractus trigeminothalamicus ventralis ; lemniscus trigeminalis
anterior trigeminothalamic tract ; ventral trigeminothalamic tract ; trigeminal lemniscus
26034 8603
tractus efferentes cerebelli (par)
efferent tracts of cerebellum (pair)
72495 5760 5760
pedunculus cerebellaris superior
superior cerebellar peduncle
31874 12256
tractus afferentes telencephali (par)
afferent tracts of telencephalon (pair)
25146 8118
fibrae striatonigrales
striatonigral fibres
27660 8122
fibrae pallidofugientes
pallidofugal fibres
26041 8605
tractus descendentes (par)
descending tracts (pair)
25797 8126
fibrae amygdalotegmentales
amygdalotegmental fibres
77482 8415 8415
tractus hypothalamospinalis
hypothalamospinal tract
8481 8481
tractus rubrospinalis
rubrospinal tract
72452 5623 5623
decussatio tegmentalis ventralis ; decussatio tegmentalis anterior
decussation of rubrospinal tract; anterior tegmental decussation ; ventral tegmental decussation
7930 7930
fasciculus longitudinalis medialis
medial longitudinal fasciculus
8494 8494
tractus interstitiospinalis
interstitiospinal tract
8490 8490
tractus tegmentalis medialis
medial tegmental tract
8491 8491
tractus pretectoolivaris
pretectoolivary tract
8492 8492
tractus prerubroolivaris
prerubroolivary tract
83850 5476 5476
tractus tegmentalis centralis
central tegmental tract
77050 34021 5322
tractus rubroolivares
rubroolivary tracts
26086 8035
white matter of cerebral peduncle (pair) ; white substance of cerebral peduncle (pair)
72634 8526 8526
tractus pyramidalis
pyramidal tract
5624 5624
fibrae corticomesencephalicae
corticomesencephalic fibres
9196 9196
tractus corticorubralis
corticorubral tract
32020 12543
tractus corticopontini
corticopontine tracts
75223 6243 6243
tractus frontopontinus
frontopontine tract
8533 8533
tractus occipitoparietotemporopontinus
occipitoparietotemporopontine tract
161 lines
95.3 %
94.2 %
Scientific notes
UID
Libelle of note
5575
Traditionally, the Mesencephalon was subdivided into the Tectum (the Colliculi) and the Pedunculus (the Crus cerebri, the Substantia.VTA complex and the Tegmentum mesencephali). Here it is advocated to use the term Pedunculus only for what it actually is: a large bundle of fibres from the Telencephalon to the Brain stem and Spinal cord.
5598
The Pars compacta may be further subdivided into two parts or tiers, each with subnuclei (Braak H, Braak E 1986 Nuclear configuration and neuronal types of the nucleus niger in the brain of the human adult. Human Neurobiol 5:71-82; van Domburg PHMF, ten Donkelaar HJ 1991 The human substantia nigra and ventral tegmental area. Adv Anat Embryol Cell Biol 121:1-130); here, the subdivision by Halliday G, Reyes S, Double K (2012 Substantia nigra, ventral tegmental area and retrorubral fields. In: Mai JK, Paxinos G, eds: The Human Nervous System, 3rd ed. Elsevier, Amsterdam, pp 439-455) is used. The various subnuclei partly correspond to the subdivision into Nigrosomes and Matrix (Damier P, Hirsch EC, Agid Y, Graybiel AM 1999 The substantia nigra of the human brain. I. Nigrosomes and the nigral matrix, a compartmental organization based on calbindin D28k immunohistochemistry. Brain 122:1421-1436).
5672
The Nucleus externus is a laminar structure; in Amunts K, Morosan P, Hilbig H, Zilles K (2012 Auditory system. In: Mai JK, Paxinos G, eds: The Human Nervous System, 3rd ed. Elsevier, Amsterdam, pp 1270-1300) described as External cortex of Inferior colliculus (ECIC) to replace the TA term Nucleus lateralis. In TH, the Nucleus pericentralis is described as Dorsal cortex with Layers I-IV, based on: Geniec P, Morest DK (1971) The neuronal architecture of the human posterior colliculus; Acta Oto-Laryngol 295:(Suppl):1-33; supported by immunohistochemical data in rhesus monkeys by Amunts et al. (2012; their Dorsal cortex of inferior colliculus).
5673
See note # 5672
7460
The Tractus vestibulomesencephalici include (Büttner-Ennever JA, Gerrits NM 2004 Vestibular system. In: Paxinos G, Mai JK, eds. The Human Nervous System, 2nd ed. Elsevier, Amsterdam, pp 1213-1240): the Tractus vestibulomesencephalicus medialis, containing fibres from Vestibular nuclei to Oculomotor nuclei, passing via the MLF; the Tractus vestibulomesencephalicus lateralis, with fibres from the Lateral vestibular nucleus to Oculomotor nuclei, passing just lateral to the MLF (eponym: Ascending tract of Deiters; the Tractus vestibulomesencephalicus ventralis, with fibres from the Y group and the Superior vestibular nucleus crossing in the Ventral tegmentum either within or below the Brachium conjunctivum.
8426
(Tractus trigeminothalamici): The Tractus trigeminothalamicus anterior arises in the Spinal trigeminal nucleus and joins the Medial lemniscus, whereas the Tractus trigeminothalamicus lateralis arises in the Caudal part of the Spinal trigeminal nucleus and joins the Anterolateral tract.
8430
(Tractus vestibulothalamicus): In monkeys, Vestibulothalamic projections pass via both the FLM and the Ascending tract of Deiters (Lang W, Büttner-Ennever JA, Büttner U 1979 Vestibular projections to the monkey thalamus: An autoradiographic study. Brain Res 177:3-17). Zwergal et al. (2008) demonstrated a Vestibulothalamic tract adjacent to the Medial lemniscus in humans (Zwergal A, Büttner-Ennever JA, Brandt T, Strupp M 2008 An ipsilateral vestibulothalamic tract adjacent to the medial lemniscus in humans. Brain 131:2928-2935).
8578
The two 'Olfactory gyri' in TA suggested their presence as clearly identifiable structures; this is not true. These terms remained from the classic description of the Rhinencephalon (see Gastaut H, Lammers HJ 1961 Anatomie du rhinencéphale. Masson, Paris) and have been deleted. The Cortex piriformis or Cortex olfactorius primarius is the real Olfactory cortex, and can be divided into Frontal and Temporal parts (Allison AC 1954 The secondary olfactory areas in the human brain. J Anat (Lond) 88:481-488; Heimer L, de Olmos J, Alheid GF, et al. 1999 The human basal forebrain, Part 2. Handb Chem Neuroanat 15:57-226).
Signature
Type of list P3F
List Unit Identifier 5261
Sublist 1 5602 substantia alba tegmenti mesencephali 50/37 on 8.4.2019
Sublist 2 5625 substantia grisea tegmenti mesencephali 170/59 on 8.4.2019
Sublist 3 7479 structura centralis mesencephali 18/11 on 18.4.2018
Sublist 4 8035 substantia alba pedunculi cerebri 8/7 on 18.4.2018
Sublist 5 8559 morphologia externa mesencephali 23/10 on 29.3.2019
Sublist 6 9046 substantia alba tecti mesencephali 25/16 on 18.4.2018
Sublist 7 9048 substantia grisea tecti mesencephali 48/17 on 18.4.2018
Subtotals subchildren 342 subunits 157
Proper children 10
Number of children 352 (validated)
Proper units 4
Number of units 161 (validated)
Signature 4749 (validated since 8.4.2019)
Date: 31.12.2021